*sigh* Ok Carbon, you followed the party line pretty much exactly, so I'll give you the standard rebuttals, albeit abbreviated ones (the full ones would fill volumes, due to the range of material they cover).
Read the Koran (or a translation if, like me, you're basically stuck with english). Seriously. I'd personally recommend reading it in a chronological order (it's arranged by chapter size, not order of writing) simply because I find it easier to see flow of ideas that way, but that's just a personal preference. Once you've done that let me know and we'll have a discussion about it.
Now, modern sects of Muslims (that would be the majority you spoke of) actually are peaceful. The point of what I was saying was to explain one of the reasons "Al Quaide & Co" do what they do: because, according to what the Koran actually says they're going to heaven because of it.
About the whole science thing: "If you make a "personal decision" about the nature of reality: sorry, but you're an idiot. Physics is not subjective." Ok, exactly what science is and where its boundaries are seems to be generally poorly understood by most people, but I'll give clarifying a shot: science, in its pure form, is only concerned with physical phenomena that can be observed. Science cannot make statements about reality in general. Science cannot tell you what the laws of physics are elsewhere in the universe. That may sound weird, but until we have measure it, it is outside the realm of science. Unfortunately, that's not very useful: we can't go around measuring everything all the time. I'm an engineer, not a philosopher, so when I'm designing a system I assume that the laws of physics work the same everywhere and for all time. That assumption is philosophy, not science. Scientists make these assumptions all the time, but most of the time they don't actually make a difference (even if we're in a computer simulation designed by robots, it makes no practical difference), but sometimes it's very important to understand the limits of science. Science cannot comment on the nature of God (assuming he exists of course) or, to be absolutely strict about it, the past.
We can make scientific statements about reality, however (i.e. the second law of thermal dynamics), but these are based upon a philosophical framework (such as: the laws of physics are the same everywhere). This framework cannot be proven or disproven by science, but science cannot exist without it. That is why I call it a "personal decision"--you have to make up your own mind (or mindlessly follow someone else), science won't give you an answer. You assume (as deduced from your post) physicalism: basically, that the physical universe is all that is. I don't. That's a personal decision of both our part, but does not make physics "subjective" in any way. One of us is right, and the other wrong. However, it does lead us to interpret the same data different ways. (I think huge numbers of animals laid down by sedimentary processes on all parts of the earth is indicative of a "great flood", you apparently don't.)
"Congratulations, you just answered a question about how religion is making claims of extraordinary phenomena by presupposing the existence of another extraordinary phenomenon to explain it." Not sure what the question you refer to was. I assume there's a God outside the laws of physics and make "naturalistic predictions" (Jesus chillin on water is not one of them: the prediction is that it's possible at all) based upon that presupposition. Supernatural phenomena (there really aren't very many of them in the bible to begin with) fit nicely into that framework. So what seems "extraordinary" to you fits nicely within my model. So does the origin of the universe (and life).
Modern evolutionary theory contradicts the bible? Sure, but the raw evidence does not. Biological theory is not evidence, it is the interpretation of that evidence. An example: the age of the earth. Most geologists figure it's around 4.54 billion years old and arrive at that via radioisotope dating. This compares the ratios of, say, U-235 and lead and calculates how many half-lives the specimen has experienced. All well and good, but how do you know what the original ratios were? In any theory, the early earth did not have only uranium and no lead. So what do scientists assume that early ratio was? Whatever they need it to be.
Evolutionists say the early earth had an atmosphere mostly free from oxygen. Do they say this because geology points in that direction? No (rocks they clam date from that time actually show the opposite), but that's the only way modern origin-of-life theories work. They need it to be reducing.
Evolutionists see the similarity between living things and interpret that as proof they're related: bible thumpers see it as proof they were created by the same designer. You see, it's all about the framework.
Archeology: "the scientific study of historic or prehistoric peoples and their cultures by analysis of their artifacts, inscriptions, monuments, and other such remains, esp. those that have been excavated." When I said archeology, this is what I meant. Archeology is often confused with paleontology or the study of the past in general. Like I said, archeology jives with the bible just peachy.
Anyway, this is definitely way off topic for this post. A little more on-topic: does anyone know if the Vatican put out an explanation of the list, or just the list? And if they did put out an explanation or some type of elaboration, where would that be found?